\subsubsection{\sc Books} \begin{enumerate} \item A.C.C. Coolen, `The Mathematical Theory of Minority Games - Statistical Mechanics of Interacting Agents'\\ (Oxford University Press 2005) \item A.C.C. Coolen, R. K\"{u}hn and P. Sollich, `Theory of Neural Information Processing Systems'\\ (Oxford University Press 2005) \item A.C.C. Coolen, A. Annibale and E.S. Roberts, `Generating Random Networks and Graphs'\\ (Oxford University Press 2017) \end{enumerate} \subsubsection{\sc Publications in Scientific Journals} \begin{enumerate} \item A.C.C. Coolen and D. van Norren, Biol. Cybern. 58 (1988), 123-128 \\ {\it `Kinetics of Human Cone Photopigment Explained with a Rushton-Henry Model'} \item A.C.C. Coolen and C.C.A.M. Gielen, Europhys. Lett. 7 (1988), 281-285 \\ {\it `Delays in Neural Networks'} \item A.C.C. Coolen and Th.W. Ruijgrok, Phys. Rev. A38 (1988), 4253-4255 \\ {\it `Image Evolution in Hopfield Networks'} \item A.C.C. Coolen, H.J.J. Jonker and Th.W. Ruijgrok, Phys. Rev. A40 (1989), 5295-5298 \\ {\it `Size of the Domains of Attraction in the Hopfield Model'} \item A.C.C. Coolen and F.W. Kuijk, Neural Networks 2 (1989), 495-506 \\ {\it `A Learning Mechanism for Invariant Pattern Recognition in Neural Networks'} \item A.C.C. Coolen and A.J. Noest, J. Phys. A23 (1990), 575-579 \\ {\it `Selective Pattern Recall in Neural Networks by Chemical Modulation'} \item A.C.C. Coolen, Future Generations Computer Systems 6 (1990), 121-130 \\ {\it `Ising Spin Neural Networks with Spatial Structure'} \item Th.W. Ruijgrok and A.C.C. Coolen, Acta Phys. Pol. B21 (1990), 379-389 \\ {\it `Generalised Hopfield Models for Neural Networks'} \item P.F.M.J. Verschure and A.C.C. Coolen, Network 2 (1991), 189-206 \\ {\it `Adaptive Fields: Distributed Representations of Classically Conditioned Associations'} \item A.C.C. Coolen, J. Phys. A24 (1991), 2665-2675 \\ {\it `Analytical Expressions for Neural Interactions which Improve upon the Projector Rule'} \item A.C.C. Coolen, Europhys. Lett. 16 (1991), 73-78 \\ {\it `On the Relation between Stability Parameters and Sizes of Domains of Attraction in Attractor Neural Networks'} \item H.J.J. Jonker and A.C.C. Coolen, J. Phys. A24 (1991), 4219-4234 \\ {\it `Unsupervised Dynamic Learning in Layered Neural Networks'} \item A.C.C. Coolen and L.G.V.M. Lenders, J. Phys. A25 (1992), 2577-2592 \\ {\it `Dual Processes in Neural Network Models I: Neural Dynamics versus Dynamics of Learning'} \item A.C.C. Coolen and L.G.V.M. Lenders, J. Phys. A25 (1992), 2593-2606 \\ {\it `Dual Processes in Neural Network Models II: Analysis of Zero-temperature Fixed-Point Equations'} \item M. Bartholomeus and A.C.C. Coolen, Biol. Cybern. 67 (1992), 285-290 \\ {\it `Sequences of Smoothly Correlated Patterns in Neural Networks with Random Transmission Delays'} \item A.C.C. Coolen and D. Sherrington, J. Phys. A25 (1992), 5493-5526 \\ {\it `Competition Between Pattern Reconstruction and Sequence Processing in Non-Symmetric Neural Networks'} \item H.J.J. Jonker and A.C.C. Coolen, J. Phys. A26 (1993), 563-579 \\ {\it `Learning in Neural Networks by Eliminating Frustrated Bonds'} \item D. Sherrington, K.Y.M. Wong and A.C.C. Coolen, J. Physique I 3 (1993), 331-337 \\ {\it `Noise and Competition in Neural Networks'} \item L. Viana and A.C.C. Coolen, J. Physique I 3 (1993), 777-786 \\ {\it `Attraction Domains in Neural Networks'} \item A.C.C. Coolen, A.J. Noest and G.B. de Vries, Network 4 (1993), 101-116 \\ {\it `Modelling Chemical Modulation of Neural Processes'} \item H.J.J. Jonker, A.C.C. Coolen and J.J. Denier van der Gon, J. Phys. A26 (1993), 2549-2571 \\ {\it `On the Function and Development of Spatial Structure in Layered Neural Networks'} \item W.A.J.J. Wiegerinck and A.C.C. Coolen, J. Phys. A26 (1993), 2535-2548 \\ {\it `The Connections of Large Perceptrons'} \item R.W. Penney, A.C.C. Coolen and D. Sherrington, J. Phys. A26 (1993), 3681-3695 \\ {\it `Coupled Dynamics of Fast Spins and Slow Interactions in Neural Networks and Spin Systems'} \item A.C.C. Coolen, R.W. Penney and D. Sherrington, Phys. Rev. B48 (1993), 16116-16118 \\ {\it `Coupled Dynamics of Fast Spins and Slow Interactions: An Alternative Perspective on Replicas'} \item A.C.C. Coolen and D. Sherrington, Phys. Rev. Lett. 71 (1993), 3886-3889 \\ {\it `Dynamics of Fully Connected Attractor Neural Networks near Saturation'} \item A.C.C. Coolen and D. Sherrington, Physica A 200 (1993), 602-607 \\ {\it `Equilibrium Distributions of Stochastic Networks without Detailed Balance'} \item A.C.C. Coolen and D. Sherrington, Phys. Rev. E49 (1994), 1921-1934 \\ {\it `Order Parameter Flow in the Fully Connected Hopfield Model near Saturation'} \item A.C.C. Coolen and S. Franz, J. Phys. A27 (1994), 6947-6954 \\ {\it `Closure of Macroscopic Laws in Disordered Spin Systems: a Toy Model'} \item A.C.C. Coolen and D. Sherrington, J. Phys. A27 (1994), 7687-7707 \\ {\it `Order Parameter Flow in the SK Spin-Glass I: Replica Symmetry'} \item S.N. Laughton and A.C.C. Coolen, J. Phys. A27 (1994), 8011-8028 \\ {\it `Quasi-periodicity and Bifurcation Phenomena in Ising Spin Neural Networks with Asymmetric Interactions'} \item S.N. Laughton and A.C.C. Coolen, Phys. Rev. E51 (1995), 2581-2599 \\ {\it `Order-Parameter Flow in Symmetric and Nonsymmetric Fully Connected Attractor Neural Networks Near Saturation'} \item W. Whyte, D. Sherrington and A.C.C. Coolen, J. Phys. A28 (1995), 3421-3437 \\ {\it `Competition Between Pattern Recall and Sequence Processing in a Neural Network Storing Correlated Patterns'} \item S.N. Laughton and A.C.C. Coolen, J. Stat. Phys. 80 (1995), 375-387 \\ {\it `Macroscopic Lyapunov Functions for Separable Stochastic Neural Networks with Detailed Balance' } \item S.N. Laughton, A.C.C. Coolen and D. Sherrington, J. Phys. A29 (1996), 763-786 \\ {\it `Order-Parameter Flow in the SK Spin-Glass II: Inclusion of Microscopic Memory Effects'} \item A.C.C. Coolen, S.N. Laughton and D. Sherrington, Phys. Rev. B53 (1996), 8184-8187 \\ {\it `Dynamical Replica Theory for Disordered Spin Systems'} \item A.C.C. Coolen and L. Viana, J. Phys. A29 (1996), 7855-7866 \\ {\it `Feed-Forward Chains of Recurrent Attractor Neural Networks Near Saturation'} \item C.W.H. Mace and A.C.C. Coolen, Statistics and Computing 8 (1998), 55-88 \\ {\it `Statistical Mechanical Analysis of the Dynamics of Learning in Perceptrons'} \item H.J.J. Jonker, A.C.C. Coolen and J.J. Denier van der Gon, Network 9 (1998), 345-362 \\ {\it `Autonomous Development of Decorrelation Filters in Neural Networks with Recurrent Inhibition'} \item A. Castellanos, A.C.C. Coolen and L. Viana, J.Phys. A31 (1998), 6615-6634 \\ {\it `Finite-Size Effects in Separable Recurrent Neural Networks'} \item A. D\"{u}ring, A.C.C. Coolen and D. Sherrington, J.Phys. A31 (1998), 8607-8621 \\ {\it `Phase Diagram and Storage Capacity of Sequence Processing Neural Networks'} \item G. Jongen, D. Boll\'{e} and A.C.C. Coolen, J. Phys. A31 (1998), L737-L742 \\{\it `The XY Spin-Glass with Slow Dynamic Couplings'} \item H.C. Rae, P. Sollich and A.C.C. Coolen, J. Phys. A32 (1999), 3321-3339 \\{\it `On-Line Learning with Restricted Training Sets: An Exactly Solvable Case'} \item N.S. Skantzos and A.C.C. Coolen, J. Phys. A33 (2000), 1841-1855 \\{\it `Random Field Ising Chains with Synchronous Dynamics'} \item N.S. Skantzos and A.C.C. Coolen, J. Phys. A33 (2000), 5785-5807 \\{\it `$(1+\infty)$-Dimensional Attractor Neural Networks'} \item A.C.C. Coolen and D. Saad, Phys. Rev. E62 (2000), 5444-5487 \\{\it `Dynamics of Learning with Restricted Training Sets'} \item P. Sollich, N. Nishimori, A.C.C. Coolen and A.J. van der Sijs, J. Phys. Soc. Jap. 69 (2000), 3200-3213 \\{\it `Nontrivial Phase Behaviour in the Infinite-Range Quantum Mattis Model'} \item A.C.C. Coolen, D. Saad and Y.S. Xiong, Europhys. Lett. 51 (2000), 691-697 \\{\it `On-line Learning from Restricted Training Sets in Multilayer Neural Networks'} \item H.C. Rae, J.F. Heimel and A.C.C. Coolen, J. Phys. A33 (2000), 8703-8722 \\{\it `Non-deterministic Learning Dynamics in Large Neural networks due to Structural Data Bias'} \item N.S. Skantzos and A.C.C. Coolen, J. Phys. A34 (2001), 929-942 \\{\it `Attractor Modulation and Proliferation in $(1+\infty)$-Dimensional Neural Networks'} \item J. van Mourik and A.C.C. Coolen, J. Phys. A34 (2001), L111-L117 \\{\it `Cluster Derivation of Parisi's RSB Solution for Disordered Spin Systems} \item J.A.F. Heimel and A.C.C. Coolen, Phys. Rev. E63 (2001), 056121 \\{\it `Generating Functional Analysis of the Dynamics of the Batch Minority Game with Random External Information'} \item G. Jongen, J. Anem\"{u}ller, D. Boll\'{e}, A.C.C. Coolen and C Perez-Vicente, J. Phys. A34 (2001), 3957-3984 \\{\it `Coupled Dynamics of Fast Spins and Slow Exchange Interactions in the XY Spin Glass' } \item N.S. Skantzos, J. van Mourik and A.C.C. Coolen, J. Phys. A34 (2001), 4437-4457 \\{\it `A Solvable Model of Secondary Structure Formation in Random Hetero-Polymers'} \item J.I. Inoue and A.C.C. Coolen, J. Phys. A34 (2001), L401-L408 \\{\it `Dynamics of On-Line Hebbian Learning with Structurally Unrealizable Restricted Training Sets'} \item H. Chakravorty, J. van Mourik and A.C.C. Coolen, Eur. Phys. J. E5 (2001), 539-550 \\{\it `Solvable Lattice Gas Models of Random Heteropolymers at Finite Density II: Dynamics and Transitions to Compact States'} \item J.A.F. Heimel and A.C.C. Coolen, J. Phys. A34 (2001), 9009-9026 \\{\it `Supervised Learning with Restricted Training Sets: a Generating Functional Analysis'} \item A.C.C. Coolen and J.A.F. Heimel, J. Phys. A34 (2001), 10783-10804 \\{\it `Dynamical Solution of the On-Line Minority Game'} \item A.C.C. Coolen, J.A.F. Heimel and D. Sherrington, Phys. Rev. E65 (2001), 016126 \\{\it `Dynamics of the Batch Minority Game with Inhomogeneous Decision Noise'} \item T. Uezu and A.C.C. Coolen, J. Phys. A35 (2002), 2761-2809 \\{\it `Hierarchical Self-Programming in Recurrent Neural Networks'} \item D. Sherrington, A.C.C. Coolen and J.A.F. Heimel (2002), Physica A 314, 83-91 \\ {\it `Stochastic decision making in the minority game'} \item H. Chakravorty, A.C.C. Coolen and D. Sherrington, J. Phys. A35 (2002), 8647-8671 \\{\it `Coupled dynamics of sequence selection and compactification in mean-field hetero-polymers'} \item A.C.C. Coolen and C. P\'{e}rez-Vicente, J. Phys. A36 (2003), 4477-4508 \\{\it `Partially and Fully Frustrated Coupled Oscillators with Random Pinning Fields''} \item A.C.C. Coolen, Markov Processes and Related Fields 9 (2003), 177-194 \\{\it `Non-Equilibrium Statistical Mechanics of Minority Games'} \item A.C.C. Coolen and V. Del Prete, Rev. Neurosci. 14 (2003), 181-193 \\{\it `Statistical mechanics beyond the Hopfield model: solvable problems in neural network theory'} \item B. Wemmenhove and A.C.C. Coolen, J. Phys. A36 (2003), 9617-9633 \\{\it `Finite Connectivity Attractor Neural Networks'} \item T. Galla, A.C.C. Coolen and D. Sherrington, J. Phys. A36 (2003), 11159-11172 \\{\it `Dynamics of a spherical Minority Game'} \item V. Del Prete and A.C.C. Coolen, Neurocomputing 58-60 (2004), 239-244 \\{\it `Non-Equilibrium Statistical Mechanics of Recurrent Networks with Realistic Neurons'} \item J.P.L. Hatchett, B. Wemmenhove, I. P\'{e}rez-Castillo, T. Nikoletopoulos, N.S. Skantzos and A.C.C. Coolen, J. Phys. A37 (2004), 6201-6220 \\{\it `Parallel Dynamics of Disordered Ising Spin Systems on Finitely Connected Random Graphs'} \item T. Nikoletopoulos, A.C.C. Coolen, I. P\'{e}rez-Castillo, N.S. Skantzos, J.P.L. Hatchett and B. Wemmenhove, J. Phys. A37 (2004), 6455-6475 \\{\it `Replicated Transfer Matrix Analysis of Ising Spin Models on `Small World' Lattices'} \item J.P.L. Hatchett and A.C.C. Coolen, J. Phys. A37 (2004), 7199-7212 \\{\it `Asymmetrically Extremely Dilute Neural Networks with Langevin Dynamics and Unconventional Results'} \item B. Wemmenhove, N.S. Skantzos and A.C.C. Coolen, J. Phys. A37 (2004), 7653-7670 \\{\it `Slowly Evolving Connectivity in Recurrent Neural Networks I: The Extreme Dilution Regime'} \item T. Nikoletopoulos and A.C.C. Coolen, J. Phys. A37 (2004), 8433-8456 \\{\it `Diagonalization of Replicated Transfer Matrices for Disordered Ising Spin Systems'} \item I. P\'{e}rez-Castillo, B. Wemmenhove, J.P.L. Hatchett, A.C.C. Coolen, N.S. Skantzos and T. Nikoletopoulos, J. Phys. A37 (2004), 8789-8799 \\{\it `Analytic Solution of Attractor Neural Networks on Scale-free Graphs'} \item A.C.C. Coolen, J. Phys. A38 (2005), 2311-2347 \\{\it `Generating functional analysis of minority games with real market histories'} \item A.C.C. Coolen, N.S. Skantzos, I. P\'{e}rez Castillo, C.J. Perez Vicente, J.P.L. Hatchett, B. Wemmenhove and T. Nikoletopoulos, J. Phys. A38 (2005), 8289-8317 \\{\it `Finitely connected vector spin systems with random matrix interactions'} \item J.P.L. Hatchett, I. P\'{e}rez Castillo, A.C.C. Coolen and N.S. Skantzos, Phys. Rev. Lett. 95 (2005), 117204 \\{\it `Dynamical replica analysis of disordered Ising spin systems on finitely connected random graphs'} \item T. Uezu, C. Kadono, J.P.L. Hatchett and A.C.C. Coolen, Prog. Theor. Phys. 161 (2006), 385-388\\ {\it `A large scale dynamical system immune network model with finite connectivity'} \item N. Shayeghi and A.C.C. Coolen, J. Phys. A39 (2006), 13921-13950\\ {\it `Generating functional analysis of batch minority games with arbitrary strategy numbers'} \item A. Mozeika and A.C.C. Coolen, J. Phys. A41 (2008), 115003\\ {\it `Dynamical replica analysis of processes on finitely connected random graphs: I. Vertex covering'} \item C.J. P\'{e}rez-Vicente and A.C.C. Coolen, J. Phys. A41 (2008), 255003\\ {\it `Spin models on random graphs with controlled topologies beyond degree constraints'} \item S. Rabello, A.C.C. Coolen, C.J. P\'{e}rez-Vicente and F. Fraternali, J. Phys. A41 (2008), 285004\\ {\it `A solvable model of the genesis of amino-acid sequences via coupled dynamics of folding and slow genetic variation'} \item A.C.C. Coolen and N. Shayeghi, J. Phys. A41 (2008), 324006 \\ {\it `Generating functional analysis of minority games with inner product strategy definitions'} \item P. Papadopoulos and A.C.C. Coolen, J. Phys. A41 (2008), 365002 \\ {\it `Market response to external events and interventions in spherical minority games'} \item G. Bianconi, A.C.C. Coolen and C.J. Perez-Vicente, Phys. Rev. E78 (2008), 016114 \\ {\it `Entropies of complex networks with hierarchically constrained topologies'} \item K. Makrogianneli et al, Mol. Cell Biol. 29 (2009), 2997-3006 \\ {\it `Integrating receptor signal inputs that influence small rho GTPase activation dynamics at the immunological synapse'} \item A. Mozeika and A.C.C. Coolen, J. Phys. A42 (2009), 195006\\ {\it `Dynamical replica analysis of processes on finitely connected random graphs: II. Dynamics in the Griffiths phase of the diluted Ising ferromagnet'} \item K. Mimura and A.C.C. Coolen, J. Phys. A42 (2009), 415001\\ {\it `Parallel dynamics of disordered Ising spin systems on finitely connected random graphs with arbitrary degree distributions'} \item A.C.C. Coolen, A. De Martino and A. Annibale, J. Stat. Phys. 136 (2009), 1035-1067\\ {\it `Constrained Markovian dynamics of random graphs'} \item A. Annibale, A.C.C. Coolen, L.P. Fernandes, F. Fraternali and J. Kleinjung, J. Phys. A: Math. Theor. 42 (2009), 485001 \\ {\it `Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure'} \item M. Kelleher et al, Targ. Oncol. 10.1007 (2009), s11523-009-0116-y \\ {\it `The potential of optical proteomic technologies to individualize prognosis and guide rational treatment for cancer patients'} \item P. Papadopoulos and A.C.C. Coolen, J. Phys. A: Math. Theor. 43 (2010) 025005 \\ {\it `Theory of agent-based market models with controlled levels of greed and anxiety'} \item A. Annibale, A.C.C. Coolen and G. Bianconi, J. Phys. A: Math. Theor. 43 (2010) 395001 \\ {\it `Network resilience against intelligent attacks constrained by the degree-dependent node removal cost'} \item L.P. Fernandes, A. Annibale, J. Kleinjung, A.C.C. Coolen and F. Fraternali, PLoS ONE 5 (2010) e12083\\ {\it `Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods'} \item P.R. Barber, S.M. Ameer-Beg, S. Pathmananthanan, M. Rowley and A.C.C. Coolen, Biomedical Optics Express 1 (2010), 1148-1155\\ {\it` A Bayesian method for single molecule, fluorescence burst analysis'} \item E.S. Roberts, T. Schlitt and A.C.C. Coolen, J. Phys. A 44 (2011) 275002\\ {\it `Tailored graph ensembles as proxies or null models for real networks II: results on directed graphs} \item A. Annibale and A.C.C. Coolen, Interface Focus 1 (2011) 536-556\\ {\it `What you see is {\em not} what you get: how sampling affects macroscopic features of biological networks} \item L.M. Carlin et al, Science Signaling 4 (2011) 1-11\\ {\it `A Targeted siRNA Screen Identifies Regulators of Cdc42 Activity at the Natural Killer Cell Immunological Synapse'} \item A.C.C. Coolen and K. Takeda, Philosophical Magazine 92 (2011) 64 - 77 \\ {\it `Transfer operator analysis of the parallel dynamics of disordered Ising chains'} \item N. Shayeghi, T. Ng and A.C.C. Coolen, J. Theor. Biol. 304 (2012) 219-225\\ {\it `Direct Response Analysis in cellular signalling networks'} \item E. S. Roberts and A. C. C. Coolen, Phys. Rev. E 85 (2012) 046103 \\ {\it `Unbiased degree-preserving randomization of directed binary networks'} \item E. Agliari, A. Annibale, A. Barra, A.C.C. Coolen and D. Tantari, J. Phys. A 46 (2013) 335101\\ {\it `Immune networks: multi-tasking capabilities at medium load'} \item E. Agliari, A. Annibale, A. Barra, A.C.C. Coolen and D. Tantari, J. Phys. A 46 (2013) 415003\\ {\it `Immune networks: multi-tasking capabilities near saturation'} \item E.S. Roberts and A.C.C. Coolen, J. Phys. A 47 (2014) 046103 \\ {\it `Entropies of tailored random graph ensembles: bipartite graphs, generalized degrees, and node neighbourhoods'} \item G. Weitsman et al, Biochem. Soc. Trans. 42 (2014) 1498-1505\\ {\it `Imaging tumour heterogeneity of the consequences of a PKCa-substrate interaction in breast cancer patients'} \item S.S. Chung, A. Pandini, A. Annibale, A.C.C. Coolen, N.S.B. Thomas and F. Fraternali, Sci. Rep. 5:8540 (2015) \\ {\it `Bridging topological and functional information in protein interaction networks by short loops profiling'} \item A. Mozeika and A.C.C. Coolen, J. Phys. A 48 (2015) 255001\\ {\it `Spin systems on hyper cubic Bethe lattices: a Bethe-Peierls approach'} \item A. Annibale, A.C.C. Coolen and N. Planell-Morell, J. R. Soc. Interface 12 (2015), 20150573\\ {\it `Quantifying noise in mass spectrometry and yeast two-hybrid protein interaction experiments'} \item J.E. Barrett and A.C.C. Coolen, Statistics in Medicine (2015), DOI: 10.1002/sim.6784\\ {\it `Covariate dimension reduction for survival data via the Gaussian process latent variable model'} \item W. Wulaningsih et al, BMC Cancer (2015), DOI 10.1186/s12885-015-1928-z\\ {\it `Prediagnostic serum glucose and lipids in relation to survival in breast cancer patients: a competing risk analysis'} \item A. Shalabi, M. Inoue, J. Watkins, E. De Rinaldis and A.C.C. Coolen, Stat. Meth. Med. Res. (2016), DOI: 10.1177//0962280216628901\\ {\it `Bayesian clinical classification from high-dimensional data: signatures versus variability'} \item G. Weitsman et al, Oncotarget 7 (2016), 51012-51026\\ {\it `HER2-HER3 dimer quantification by FLIM-FRET predicts breast cancer metastatic relapse independently of HER2 IHC status'} \item M.I. Rowley, A.C.C. Coolen, B. Vojnovic and P.R. Barber, PLOS ONE (2016), DOI: 10.1371/journal.pone.0158404\\ {\it `Robust Bayesian fluorescence lifetime estimation, decay model selection and instrument response determination for low-intensity FLIM imaging'} \item V.G. Martin et al, Front. Immunol. 7 (2016) 546, DOI: 10.3389/fimmu.2016.00546\\ {\it `Transitional B Cells in Early Human B Cell Development. Time to Revisit the Paradigm?'} \item A. Mozeika and A.C.C. Coolen, J. Phys. A: Math. Theor. 50 (2017) 035602 \\ {\it `Statistical mechanics of clonal expansion in lymphocyte networks modelled with slow and fast variables'} \item M. Rowley, H. Garm\"{o}, M. Van Hemelrijck, W. Wulaningsih, B. Grundmark, B. Zethelius, N. Hammar, G. Walldius, M. Inoue, L. Holmberg and A.C.C. Coolen, Statistics in Medicine (2017), DOI: 10.1002/sim.7246\\ {\it `A latent class model for competing risks'} \item E. Agliari, A. Annibale, A. Barra, A.C.C. Coolen and D. Tantari, EPL 117 (2017) 28003\\ {\it `Retrieving infinite numbers of patterns in a spin-glass model of immune networks'} \item A.C.C. Coolen, J.E.Barrett, P. Paga and C.J. Perez-Vicente, J. Phys. A: Math. Theor. 50 (2017) 375001 \\ {\it `Replica analysis of overfitting in regression models for time-to-event data'} \item A. Grigoriadis, P. Gazinska, T. Pai, S. Irshad, Y. Wu, R. Millis, K. Naidoo, J. Owen, C.E. Gillett, A. Tutt, A.C.C. Coolen and S.E. Pinder, J. Path: Clin. Res. (2018), DOI: 10.1002/cjp2.87\\ {\it `Histological scoring of immune and stromal features in breast and axillary lymph nodes is prognostic for distant metastasis in lymph node-positive breast cancers'} \item F. Aguirre Lopez, P. Barucca, M. Fekom and A.C.C. Coolen, J. Phys. A: Math. Theor. 51 (2018) 085101 \\ {\it `Exactly solvable random graph ensemble with extensively many short cycles'} \item C. Haggstrom, M. Van Hemelrijck, H. Garmo, D. Robinson, P. Sattin, M. Rowley, A.C.C. Coolen and L. Holmberg, Int. J. Cancer (2018), DOI: 10.1002/ijc.31587 \\ {\it `Heterogenity in risk of prostate cancer: a Swedish population-based cohort study of competing risks and Type 2 diabetes mellitus'} \item A. Mozeika and A.C.C. Coolen, Phys. Rev. E98 (2018) 042133\\ {\it `Mean-field theory of Bayesian clustering'} \item M. Sheikh and A.C.C. Coolen, Journal of Classification (2019), DOI: 10.1007/s00357-019-09316-6\\ {\it `Accurate Bayesian data classification without hyperparameter cross-validation'} \item M. Sheik and A.C.C. Coolen, J. Phys. A: Math. Theor. 52 (2019) 384002\\ {\it `Analysis of overfitting in the regularized Cox model'} \item P.R Barber, G. Weitsman, K. Lawler, J.E.Barrett, M. Rowley, M. Rodriguez-Justo, D. Fisher, F. Gao, I.D.C. Tullis, J. Deng, L. Brown, R. Kaplan, D. Hochhauser, R. Adams, T.S. Maughan, B. Vojnovic, A.C.C. Coolen, T. Ng, J. Natl. Cancer Inst (2020) 112(9): doi: 10.1093/jnci/djz231\\ {\it `HER2-HER3 heterodimer quantification by FRET-FLIM and patient subclass analysis of the COIN colorectal trial'} \item F. Aguirre L\'{o}pez and A.C.C. Coolen, J. Phys. A: Math. Theor. 53 (2020) 065002\\ {\it `Imaginary replica analysis of loopy regular random graphs'} \item A. Mozeika and A.C.C. Coolen, J. Phys. A: Math. Theor. 53 (2020) 034001\\ {\it `Replica analysis of Bayesian data clustering'} \item A.C.C. Coolen, M. Sheikh, A. Mozeika, F. Aguirre-Lopez and F. Antenucci, J. Phys. A: Math. Theor. 53 (2020) 365001\\ {\it `Replica analysis of overfitting in generalized linear regression models'} \item J.M. Colijn et al, Ophthalmology 20 (2020) doi: 10.1016/j.ophtha.2020.11.024\\ {\it `Genetic Risk, Lifestyle, and Age-Related Macular Degeneration in Europe: The EYE-RISK Consortium'} \item S. Abdul-Jawad et al, Cancel Cell (2021) doi: https://doi.org/10.1016/j.ccell.2021.01.001\\ {\it `Acute immune sugnatures and their legacies in severe acute respiratory syndrome coronavirus-2 infected cancer patients'} \item F. Aguirre L\'{o}pez and A.C.C. Coolen, J. Phys. Complex. 2 (2021) 035010 \\ {\it `Transitions in random graphs of fixed degrees with many short cycles'} \item A. Mozeika, M. Sheikh, F. Aguirre L\'{o}pez, F. Antenucci and A.C.C. Coolen, Phys. Rev. E 103 (2021) 042142 \\ {\it `Exact results on high-dimensional linear regression via statistical physics'} \end{enumerate} \subsubsection{\sc Review Papers, Book Chapters \& Edited Books} \begin{enumerate} \item A.C.C. Coolen and D. Sherrington, `Mathematical Approaches to Neural Networks' (North-Holland 1993; ed. J.G. Taylor), 293-306 \\ {\it `Dynamics of Attractor Neural Networks'} \item D. Sherrington, A.C.C. Coolen and S.N. Laughton, CNLS Newsletter (Los Alamos) 124 (1996), 1-12 \\ {\it `Macrodynamics of Disordered and Frustrated Systems'} \item Th.M. Nieuwenhuizen and A.C.C. Coolen, Nederlands Tijdschrift voor Natuurkunde 62/7 (1996), 187-190 \\ {\it `Breking van Ergodiciteit in Glasachtige Spinsystemen'} \item A.C.C. Coolen, in `Concepts for Neural Networks - A Survey' (Springer 1998; eds. L.J. Landau and J.G. Taylor), 13-70 \\ {\it `A Beginner's Guide to the Mathematics of Neural Networks'} \item A.C.C. Coolen, in Handbook of Biological Physics Vol 4 (Elsevier Science 2001; eds. F. Moss and S. Gielen), 531-596 \\ {\it `Statistical mechanics of Recurrent Neural networks I: Statics'} \item A.C.C. Coolen, in Handbook of Biological Physics Vol 4 (Elsevier Science 2001; eds. F. Moss and S. Gielen), 597-662 \\ {\it `Statistical mechanics of Recurrent Neural networks II: Dynamics'} \item `Disordered and Complex Systems' (AIP Conference Proceedings 553, 2001; eds. P. Sollich, A.C.C. Coolen, L.P. Hughston and R.F. Streater) \item A.C.C. Coolen, in `Handbook of Brain Theory and Neural Networks - 2nd Edition (2002) MIT Press (MA Arbib, Ed), 377-381 \\ {\it `Dynamics of recall and association'} \item G.O. Fruhwirth, L.P. Fernandes, G. Weitsman, G. Patel, M. Kelleher, K. Lawler, A. Brock, S.P. Poland, Dr. D.R. Matthews, G. Keri, P.R. Barber, B. Vojnovic, S.M. Ameer-Beg, A.C.C. Coolen, F. Fraternali, T. Ng, Chem. Phys. Chem 12 (2011) 442-461\\ {\it `How F\"{o}rster Resonance Energy Transfer Imaging Improves the Understanding of Protein Interaction Networks in Cancer Biology'} \item A.C.C. Coolen, F. Fraternali, A. Annibale, L.P. Fernandes, and J. Kleinjung, in Handbook of Statistical Systems Biology (Wiley; M Stumpf, DJ Balding and M Girolami, Eds) (2011) 309-330\\ {\it `Modelling biological networks via tailored random graphs'} \end{enumerate} \subsubsection{\sc Publications in Conference Proceedings} \begin{enumerate} \item A.C.C. Coolen, J.J. Denier van der Gon and Th.W. Ruijgrok, `Neural Networks from Models to Applications' (IDSET Paris 1989; ed. L. Personnaz and G. Dreyfus), 269-278 \\ {\it `An Exact Dynamical Solution for Generalised Hopfield Networks'} \item C.C.A.M. Gielen and A.C.C. Coolen, `Neural Networks from Models to Applications' (IDSET Paris 1989; ed. L. Personnaz and G. Dreyfus), 269-278 \\ {\it `Self-Organisation in Neural Networks Underlying the Coordination of Movements'} \item H.J.J. Jonker, A.C.C. Coolen and J.J. Denier van der Gon, `Artificial Neural Networks' (IEE London 1989), 23-26 \\ {\it `Linear Interpolation with Binary Neurons'} \item A.C.C. Coolen, J.J. Denier van der Gon and Th.W. Ruijgrok, `Artificial Neural Networks' (IEE London 1989), 238-241 \\ {\it `Evolution Equations for Neural Networks with Arbitrary Spatial Structure'} \item A.C.C. Coolen and J.J. Denier van der Gon, `Intelligent Autonomous Systems II' (IAS Amsterdam 1989; ed. T. Kanade, F. Groen and L. Hertzberger), 89-99 \\ {\it `Evolution Equations for Neural Networks with Arbitrary Spatial Structure: The Onset of Order'} \item J.J. Denier van der Gon, A.C.C. Coolen, C.J. Erkelens and H.J.J. Jonker, `Multiple Muscle Systems' (Springer New York 1990; ed. J. Winters and S. Woo), 336-342 \\ {\it `Self-Organizing Neural Mechanisms Possibly Responsible for Movement Coordination'} \item A.C.C. Coolen, `Statistical Mechanics of Neural Networks' (Springer Berlin 1990; ed. L. Garrido), 381-396 \\ {\it `Ising Spin Neural Networks with Spatial Structure'} \item M. Braamhof (presently: Abramoff), A.C.C. Coolen, G. Wieneke and P. Janssen, `Speech Motor Control and Stuttering' (Elsevier Science Publ. 1991; ed. Peters, Hulstijn and Starkweather), 181-188 \\ {\it `Can Neural Networks Explain Dysfluent Speech ?'} \item W. Wiegerinck and A.C.C. Coolen, `Artificial Neural Networks 2' (Elsevier Science Publ. 1992; ed. I. Aleksander and J. Taylor), 277-280 \\ {\it `The Connections of Large Perceptrons'} \item A.C.C. Coolen, A.J. Noest and G.B. de Vries, `Neural Networks: from Biology to High Energy Physics II' (World Scientific 1993; ed. O. Benhar, C. Bosio, P. Del Giudice and M. Grandolfo), 149-161 \\ {\it `The Modeling of Chemical Modulation in Neural Networks'} \item A.C.C. Coolen and D. Sherrington, `ICANN '93' (Springer-Verlag 1993; ed. S. Gielen and B. Kappen), 722-725 \\ {\it `Equilibrium Statistical Mechanics of Non-symmetric Neural Networks'} \item A.C.C. Coolen, R.W. Penney and D. Sherrington, `Neural Information Processing Systems 6' (Morgan Kaufmann 1994; ed. J.D. Cowan, G. Tesauro and J. Alspector), 447-454 \\ {\it `Coupled Dynamics of Fast Neurons and Slow Interactions'} \item D. Sherrington and A.C.C. Coolen, `25 Years of Non-Equilibrium Statistical Mechanics', Proc. Sitges XIII, (Springer Lecture Notes in Physics 1995; ed. J. Brey, J. Marro, J. Rubi and M. San Miguel), 161-176 \\ {\it `Evolution of Order Parameters in Disordered Spin Systems - a Closure Procedure'} \item D. Sherrington, R.W. Penney and A.C.C. Coolen. `Chaos and Complexity', Proc. Blois 1993, (Editions Frontiers 1995; eds. Tran Thanh Van, Berge, Conte and Dubois), 229-232 \\ {\it `Complexity in the Coupled Dynamics of Fast Neurons and Slow Synapses'} \item A.C.C. Coolen, S.N. Laughton and D. Sherrington, `Neural Information Processing Systems 8' (MIT Press 1996; ed. D.S. Touretzky, M.C. Moser and M.E. Hasselmo), 253-259 \\ {\it `Modern Analytic Techniques to Solve the Dynamics of Recurrent Neural Networks'} \item D. Sherrington, A.C.C. Coolen and S.N. Laughton, `StatPhys 19', (World Scientific 1996; ed. H. Bailin), 401-409 \\ {\it `Macrodynamics of Disordered and Frustrated Systems'} \item A.C.C. Coolen and L. Viana, `Biological and Artificial Computation: From Neuroscience to Technology', (Springer 1997; eds. J. Mira, R. Moreno-D\'{i}az and J. Cabestany), 257-264 \\ {\it `Competition Between Feed-Forward and Lateral Information Processing in Layered Neural Networks'} \item A.C.C. Coolen and D. Saad, `On-Line Learning in Neural Networks', (Cambridge U.P. 1998; ed. D. Saad), 303-343 \\ {\it `Dynamics of Supervised Learning with Restricted Training Sets'} \item G. Jongen, J. Anem\"{u}ller, D. Boll\'{e} and A.C.C. Coolen, `StatPhys 21', (Springer 1998; eds. A. Gervois, M. Gingold, D. Iagolnitzer), 12-12 \\ {\it `Networks of fast Oscillators with Slow Dynamic Couplings'} \item N.S. Skantzos, C.F. Beckmann and A.C.C. Coolen, `Neural Information Processing Systems 11' (MIT Press 1999; ed. M.S. Kearns, S.A. Solla, D.A. Cohn), 337-343 \\{\it `Discontinuous Recall Transitions Induced by Competition Between Short- and Long-Range Interactions in Recurrent Networks'} \item H.C. Rae, P.K. Sollich and A.C.C. Coolen, `Neural Information Processing Systems 11' (MIT Press 1999; ed. M.S. Kearns, S.A. Solla, D.A. Cohn), 316-322 \\{\it `On-Line Learning with Restricted Training Sets: Exact Solution as a Benchmark for General Theories'} \item A. D\"{u}ring, A.C.C. Coolen and D. Sherrington, `Neural Information Processing Systems 11' (MIT Press 1999; ed. M.S. Kearns, S.A. Solla, D.A. Cohn), 211-217 \\{\it `Phase Diagram and Storage Capacity of Sequence Storing Neural Networks'} \item A.C.C. Coolen and D. Saad, `Neural Information Processing Systems 11' (MIT Press 1999; ed. M.S. Kearns, S.A. Solla, D.A. Cohn), 197-203 \\{\it `Dynamics of Supervised Learning with Restricted Training Sets'} \item L. Viana, A. Castellanos and A.C.C. Coolen, `Proc. IWANN '99 - Lect. Notes. in Comp. Sci. 1606' (Springer 1999; ed. J. Mira), 393-400 \\{\it `Finite Size Effects in Neural Networks'} \item A.C.C. Coolen and C.W.H. Mace, `Neural Information Processing Systems 12' (MIT Press 2000; ed. M.S. S.A. Solla, T.K. Leen and K.R. M\"{u}ller), 237-243 \\{\it `Dynamics of Supervised Learning with Restricted Training Sets and Noisy Teachers'} \item A.C.C. Coolen and J. van Mourik, `Disordered and Complex Systems' (AIP Press 2001; ed. P. Sollich, A.C.C. Coolen, L.P. Hughston and R.F. Streater, 55-60 \\{\it `Cluster Derivation of the Parisi Scheme for Disordered Systems'} \item N.S. Skantzos and A.C.C. Coolen, `Disordered and Complex Systems' (AIP Press 2001; ed. P. Sollich, A.C.C. Coolen, L.P. Hughston and R.F. Streater, 101-106 \\{\it `Random Field Ising Chains and Neural Networks with Synchronous Dynamics'} \item N.S. Skantzos, J. van Mourik and A.C.C. Coolen, `StatPhys 21, IUPAP 21st Int. Conf. Stat. Phys.' (2001; eds. D. Lopez, M. Narbosa and A. Robledo), 290-291 \\{\it `A Solvable Model for Secondary Structure Formation in Random Hetero-Polymers'} \item K. Mimura and A.C.C. Coolen, `Proc. of 2009 Intl. Symp. Info. Theory (ISIT)' (2009), 1829 \\{\it `Generating Functional Analysis of LDGM Channel Coding with Many Short Loops'} \item A.C.C. Coolen and S. Rabello, J.Phys. Conf. Series 197 (2009), 012006\\ {\it `Generating functional analysis of complex formation and dissociation in large protein interaction networks'} \item C. Gr\'{a}cio, A.C.C. Coolen and A. Annibale, Nonlinear maps and their applications, Springer Proc. Math. Stat., 57, Springer, New York (2014), 81Ð94 \\ {\it `Cycle statistics in complex networks and Ihara's zeta function'} \item E.S. Roberts, A. Annibale and A.C.C. Coolen, Nonlinear maps and their applications, Springer Proc. Math. Stat., 57, Springer, New York (2014), 25-34\\ {\it `Controlled Markovian dynamics of graphs: unbiased generation of random graphs with prescribed topological properties'} \item E.S. Roberts and A.C.C. Coolen, ESAIM: Proceedings and Surveys 47 (2014), 97-115\\ {\it `Random graph ensembles with many short loops'} \item A.C.C. Coolen, J.Phys. Conf. Series 699 (2016), 012022\\ {\it `Replica methods for loopy sparse random graphs'} \end{enumerate} %\subsubsection*{\sc Papers accepted for publication} %\begin{enumerate} %\item %A.C.C. Coolen and K Takeda, Phil. Mag (in press 2011)\\ %{\it `Transfer operator analysis of the parallel dynamics of disordered Ising chains'} %\end{enumerate} %\subsubsection{Accepted papers}