Bakker R., Schubert D., Levels K., Bezgin G., Bojak I., Kötter R. (2009). Classification of cortical microcircuits based on micro-electrode-array data from slices of rat barrel cortex. Neural Networks (in press).

Bohland J.W., Wu C.Z., Barbas H., Bokil H., Bota M., Breiter H.C., Cline H.T., Doyle J.C., Freed P.J., Greenspan R.J., Haber S.N., Hawrylycz M., Herrera D.G., Hilgetag C.C., Huang Z.J., Jones A., Jones E.G., Karten H.J., Kleinfeld D., Kötter R., Lester H.A., Lin J.M., Mensh B.D., Mikula S., Panksepp J., Price J.L., Safdieh J., Saper C.B., Schiff N.D., Schmahmann J.D., Stillman B.W., Svoboda K., Swanson L.W., Toga A.W., Van Essen D.C., Watson J.D., Mitra P.P. (2009). A proposal for a coordinated effort for the determination of brainwide neuroanatomical connectivity in model organisms at a mesoscopic scale. PLoS Comput. Biol. 5: e1000334.

Bojak I., Oostendorp T.F., Reid A.T., Kötter R. (2009). Realistic mean field forward predictions for the integration of co-registered EEG/fMRI. BMC Neurosci. 10: L2.

Deco G., Jirsa V.K., McIntosh A.R., Sporns O., Kötter R. (2009). The key role of coupling, delay and noise in resting brain fluctuations. Proc. Natl. Acad. Sci. USA 106: 10302-10307.

Knock S.A., McIntosh A.R., Sporns O., Kötter R., Hagmann P., Jirsa V.K. (2009). The effects of physiologically plausible connectivity structure on local and global dynamics in large scale brain models. J. Neurosci. Meth. 183(1): 86-94.

Reid A., Krumnack A., Wanke E., Kötter R. (2009). Optimization of cortical hierarchies with continuous ranges and scales. NeuroImage 47(2): 611-617.

Reid A., Harley C.W. (2009). An associativity requirement for locus coeruleus-induced long-term potentiation in the dentate gyrus of the urethane-anesthetized rat. Exp. Brain Res. (in press).

Reid A.T., van Norden A.G.W., de Laat K.F., van Oudheusden L.J.B., Zwiers M.P., Evans A.C., de Leeuw F.E., Kötter R. (2009). Patterns of cortical degeneration in an elderly cohort with cerebral small vessel disease. Human Brain Mapping (in press).

Staiger J.F., Zuschratter W., Luhmann H.J., Schubert D. (2009). Local circuits targeting parvalbumin-containing interneurons in layer IV of rat barrel cortex. Brain Struct. Funct. (in press).

Walz C., Elßner-Beyer B., Schubert D., Gottmann K. (2009). Properties of glutamatergic synapses in immature layer Vb pyramidal neurons: coupling of pre- and postsynaptic maturational states. Exp. Brain Res. (in press).

Bezgin G., Reid A.T., Schubert D., Kötter R. (2008). Matching spatial with ontological brain entities using integrated Java tools for visualization and database access. Neuroinformatics 7(1): 7-22.

Bezgin G., Wanke E., Krumnack A., Kötter R. (2008). Deducing logical relationships between spatially registered cortical parcellations under conditions of uncertainty. Neural Networks 21(8): 1132-1145.

Ghosh A., Rho Y., McIntosh A.R., Kötter R., Jirsa V.K. (2008). Noise during rest explores the brain s dynamic repertoire. PLoS Comput. Biol. 4(10): e1000196.

Ghosh A., Rho Y., McIntosh A.R., Kötter R., Jirsa V.K. (2008). Cortical network dynamics with time delays reveals functional connectivity in the resting brain. Cogn. Neurodyn 2: 115-120.

Kötter R. (2008). Funktionelle Neuroanatomie der Inselrinde. Nervenheilkunde 27: 425-429.

Kötter R., Cannon R.C. (2008). Open source software development for neuroinformatics. Commentary. Frontiers in Neuroinformatics 1: 8.

Bojak I., Liley D.T.J. (2007). Self-organized 40 Hz synchronization in a physiological theory of EEG. Neurocomputing 70: 2085-2090.

Coombes S., Venkov N.A., Shiau L., Bojak I., Liley D.T.J., and Laing C.R. (2007). Modeling electrocortical activity through improved local approximations of integral neural field equations. Physical Review E 76: 051901, 1-8.

Honey C., Kötter R., Breakspear M., Sporns O. (2007). Network structure of cerebral cortex shapes functional connectivity on multiple time scales. Proc. Natl. Acad. Sci. USA. 104: 10240-10245.

Kötter R., Reid A.T., Krumnack A., Wanke E., Sporns O. (2007). Shapley ratings in brain networks. Frontiers in Neuroinformatics 1: 2.

Schubert D., Kötter R., Staiger J.F. (2007). Mapping functional connectivity in barrel-related columns reveals layer- and cell type-specific microcircuits. Brain Structure and Function 212: 107-119.

Schubert D. (2007). Observing without disturbing: How different cortical neuron classes represent tactile stimuli. J. Physiol. 581(1): 5.

Sporns O., Honey C., Kötter R. (2007). Identification and classification of hubs in brain networks. PLoS One 2: e1049.

Schubert D., Kötter R., Luhmann H.J., Staiger J.F. (2006). Morphology, electrophysiology and functional input connectivity of pyramidal neurons characterizes a genuine layer Va in the primary somatosensory cortex. Cereb. Cort. 16(2): 223-36.

Bojak I., Liley D.T.J. (2005). Modeling the effects of anesthesia on the electroencephalogram. Physical Review E 71: 041902, 1-22.

Bozkurt A., Zilles K., Schleicher A., Kamper L., Sanz Arigita E., Uylings H., Kötter R. (2005). Distributions of transmitter receptors in the macaque cingulate cortex. NeuroImage 25: 219-229.

Dyhrfjeld-Johnsen J., Maier J., Schubert D., Staiger J.F., Luhmann H.J., Stephan K.E., Kötter R. (2005). CoCoDat: A database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry. J. Neurosci. Meth. 141: 291-308.

Kötter R., Wanke E. (2005). Mapping brains without coordinates. Phil. Trans. R. Soc. Lond. B. 360: 751-766.

Kötter R., Schubert D., Dyhrfjeld-Johnsen J., Luhmann H.J., Staiger J.F. (2005). Optical release of caged glutamate for stimulation of neurons in the in vitro slice preparation. J. Biochem. Opt. 10: 1.

Liley D.T.J., Bojak I. (2005). Understanding the transition to seizure by modeling the epileptiform activity of general anesthic agents. Journal of Clinical Neurophysiology 22: 300-313.

Sporns O., Tononi, G., Kötter R. (2005). The human connectome. A structural description of the human brain. PLoS Comput. Biol. 1: e42.

Tuch D.S., Wisco J.J., Khachaturian M.H., Ekstrom L.B., Kötter R., Vanduffel W. (2005). Q-ball imaging of macaque white matter architecture. Phil. Trans. R. Soc. Lond. B. 360: 869-879.

Bojak I., Liley D.T.J., Cadusch P.J., Cheng K. (2004). Electrorhythmogenesis and anaesthesia in a physiological mean field theory. Neurocomputing 58-64: 1197-1202.

Kötter R. (2004). Online retrieval, processing, and visualization of primate connectivity data from the CoCoMac database. Neuroinformatics 2: 127-144.

Northoff G., Kötter R., Baumgart F., Danos P., Boeker H., Kaulisch T., Schlagenhauf F., Walter H., Heinzel A., Witzel T., Bogerts B. (2004). Orbitofrontal cortical dysfunction in akinetic catatonia: A functional magnetic resonance study during negative emotional stimulation. Schizophr. Bull. 30: 405-427.

Sporns O., Kötter R. (2004). Motifs in brain networks.. PLoS Biol. 2: 1910-1918.

Staiger J.F., Flagmeyer I., Schubert D., Zilles K., Kötter R., Luhmann H.J. (2004). Functional diversity of layer IV spiny neurons in rat somatosensory cortex: Quantitative morphology of electrophysiologically characterized and biocytin-labeled cells. Cereb. Cortex 14: 690-701.

Bojak I., Stratmann M. (2003). Next-to-Leading Order QCD Corrections to the Polarized Hadroproduction of Heavy Flavors. Physical Review D 67: 034010, 1-9.

D.-Johnsen J., Stephan K., Maier J., Luhmann H., Kötter R. (2003). Guiding the modeller: Organizing and selecting experimental data for single cell models using the CoCoDat database. Neurocomputing 52-54: 239-245.

Hilgetag C.C., Kötter R., Théoret H., Claßen J., Wolters A., Pascual-Leone A. (2003). Bilateral competitive processing of visual spatial attention in the human brain. Neurocomputing 52-54: 793-798.

Kötter R., Stephan K.E. (2003). Network participation indices: Characterizing component roles for information processing in neural networks. Neural Networks 16: 1261-1275.

Schmitt V., Kötter R., Sommer F.T. (2003). The impact of thalamo-cortical projections on activity spread in cortex. Neurocomputing 52-54: 919-924.

Schubert D., Kötter R., Zilles K., Luhmann H.J., Staiger J.F. (2003). Cell type-specific circuits of cortical layer IV spiny neurons. J. Neurosci. 23: 2961-2970.

Bozkurt A., Kamper L., Stephan K.E., Kötter R. (2002). The structural basis of information transfer from medial temporal lobe to prefrontal cortex in the macaque monkey. Neurocomputing 44-46: 753-758.

D.-Johnsen J., Nielsen P., Luhmann H.J., Northoff G., Kötter R. (2002). Multi-level network modeling of cortical dynamics built on the GENESIS environment. Neurocomputing 44-46: 863-868.

Kamper L., Bozkurt A., Stephan K.E., Kötter R. (2002). Modelling the influence of thalamocortical projections on prefrontal activity. Neurocomputing 44-46: 869-873.

Northoff G., Witzel T., Richter A., Gessner M., Schlagenhauf F., Fell J., Baumgart F., Kaulisch T., Tempelmann C., Heinzel A., Kötter R., Hagner T., Bargel B., Hinrichs H., Bogerts B., Scheich H., Heinze H.-J. (2002). GABA-ergic modulation of prefrontal spatio-temporal activation pattern during emotional stimulation: a combined fMRI/MEG study with placebo and lorazepam.. J. Cogn. Neurosci. 14: 348-370.

Passingham R.E., Stephan K.E., Kötter R. (2002). The anatomical basis of functional localization in the cortex. Nature Rev. Neurosci. 3: 606-616.

Staiger J.F., Schubert D., Zuschratter W., Kötter R., Luhmann H.J., Zilles K. (2002). Innervation of interneurons immunoreactive for VIP by intrinsically bursting pyramidal cells and fast-spiking interneurons in infragranular layers of juvenile rat neocortex. Eur. J. Neurosci. 16: 11-12.

Stone J.V., Kötter R. (2002). Making connections about brain connectivity. Trends Cogn. Sci. 6: 327-328.

Bozkurt A., Kamper L., Stephan K.E., Kötter R. (2001). Organization of amygdalo-prefrontal projections in primate cerebral cortex. Neurocomputing 38-40: 1135-1140.

Burns G.A.P.C., Stephan K.E., Ludäscher B., Gupta A., Kötter R. (2001). Towards a federated neuroscientific knowledge management system using brain atlases. Neurocomputing 38-40: 1519-1523.

Kötter R. (2001). Models are better than their theory. Behav. Brain Sci. 24: 1064.

Kötter R. (2001). Neuroscience databases: Tools for exploring brain structure-function relationships. Phil. Trans. R. Soc. Lond. B. 356: 1111-1120.

Kötter R., Stephan K.E., Palomero-Gallagher N., Geyer S., Schleicher A., Zilles K. (2001). Multimodal characterisation of cortical areas by multivariate analyses of receptor binding and connectivity data. Anat. Embryol. 204: 333-350.

Kötter R., Hilgetag C.C., Stephan K.E. (2001). Connectional characteristics of areas in Walker?s map of prefrontal cortex. Neurocomputing 38-40: 741-746.

Petroni F., Panzeri S., Hilgetag C.C., Kötter R., Scannell J.W., Young M.P. (2001). Hierarchical organisation and neuronal response latencies in the primate visual system. Neurocomputing 38-40: 1519-1523.

Petroni F., Panzeri S., Hilgetag C.C., Kötter R., Young M.P. (2001). Simultaneity of responses in a hierarchical visual network. NeuroReport 12: 2753-2759.

Schubert D., Staiger J.F., Cho N., Kötter R., Zilles K., Luhmann H.J. (2001). Layer-specific intracolumnar and transcolumnar functional connectivity of layer V pyramidal cells in rat barrel cortex. J. Neurosci. 21: 3580-3592.

Stephan K.E., Kamper L., Bozkurt A., Burns G.A.P.C., Young M.P., Kötter R. (2001). Advanced database methodology for the Collation of Connectivity data on the Macaque brain (CoCoMac). Phil. Trans. R. Soc. Lond. B. 356: 1159-1186.

Anson J.G., Hyland B.I., Kötter R., Wickens J.R. (2000). Parameter precueing and motor preparation. Motor Control 4: 221-231.

Cohnen M., Fischer H., Hamacher J., Lins E., Kötter R., Mödder U. (2000). CT of the head by use of reduced current and kilovoltage: relationship between image quality and dose reduction. Am. J. Neuroradiol. 21: 1654-1660.

Kötter R. (2000). Multiple personalities and views of cortical organization. Behav. Brain Sci. 23: 545-546.

Kötter R., Sommer F.T. (2000). Global relationship between structural connectivity and activity propagation in the cerebral cortex. Phil. Trans. R. Soc. Lond. B 355: 127-134.

Northoff G., Richter A., Gessner M., Schlagenhauf F., Fell J., Baumgart F., Kaulisch T., Kötter R., Stephan K.E., Leschinger A., Bargel B., Witzel T., Hinrichs H., Bogerts B., Scheich H., Heinze H.-J. (2000). Functional dissociation between medial and lateral orbitofrontal cortical spatiotemporal activation in negative and positive emotions: A combined FMRI/MEG study. Cereb. Cortex 10: 93-107.

Staiger J.F., Kötter R., Zilles K., Luhmann H.J. (2000). Laminar characteristics of functional connectivity in rat barrel cortex revealed by stimulation with caged glutamate. Neurosci. Res. 37: 49-58.

Stephan K.E., Hilgetag C.C., Burns G.A.P.C., O'Neill M.A., Young M.P., Kötter R. (2000). Computational analysis of functional connectivity between areas of primate cerebral cortex. Phil. Trans. R. Soc. Lond. B 355: 111-126.

Stephan K.E., Zilles K., Kötter R. (2000). Coordinate-independent mapping of structural and functional data by Objective Relational Transformation (ORT). Phil. Trans. R. Soc. Lond. B 355: 37-54.

Hilgetag C.C., Kötter R., Young M.P. (1999). Inter-hemispheric competition of sub-cortical structures is a crucial mechanism in paradoxical lesion effects and spatial neglect. Prog. Brain Res. 121: 121-141.

Kötter R. (1999). Trends in European computational neuroscience. Rev. Neurosci. 10: 175-179.

Kötter R., Schirok D. (1999). Towards an integration of biochemical and biophysical models of neuronal information processing: a case study in the nigro-striatal system. Rev. Neurosci. 10: 247-266.

Kötter R. (1999). Motor fluctuations in Parkinson's disease: A postsynaptic mechanism derived from a striatal model. Prog. Brain Res. 121: 277-288.

Larisch R., Kötter R., Kehren F., Tosch M., Shah N.J., Kalveram K.T., Jäncke L., Müller-Gärtner H.-W. (1999). Motivation effects in a dichotic listening task as evident from functional magnetic resonance imaging. Neurosci. Lett. 267: 29-32.

Luhmann H.J., Schubert D., Kötter R., Staiger J.F. (1999). Cellular morphology and physiology of the perinatal rat cerebral cortex.. Devel. Neurosci. 21: 298-309.

Staiger J.F., Kötter R., Zilles K., Luhmann H.J. (1999). Connectivity in the somatosensory (barrel) cortex of the adolescent rat: an in vitro biocytin study. Anat. Embryol. 199: 357-365.

Stephan K.E., Kötter R. (1999). One brain - many maps: An introduction to coordinate-independent mapping by Objective Relational Transformation (ORT). Neurocomputing 26-27: 1049-1054.

Kötter R., Wickens J.R. (1998). Striatal mechanisms in Parkinson's disease: New insights from computer modeling.. Artif. Intell. Med. 13: 37-55.

Kötter R., Feizelmeier M. (1998). Species-dependence and relationship of morphological and electrophysiological properties in nigral compacta neurons. Prog. Neurobiol. 54: 619-632.

Kötter R., Staiger J.F., Zilles K., Luhmann H.J. (1998). Analyzing functional connectivity in brain slices by a combination of infrared videomicroscopy, flash photolysis of caged compounds, and scanning methods. Neuroscience 86: 265-277.

Kötter R., Stephan K.E. (1997). Useless or helpful? The "limbic system" concept.. Rev. Neurosci. 8: 139-145.

Kötter R., Wickens J.R. (1995). Interactions of glutamate and dopamine in a computational model of the striatum. J. Comput. Neurosci. 2: 195-214.

Wickens J.R., Kötter R., Alexander M.E. (1995). Effects of local connectivity on striatal function: Simulation and analysis of a model. Synapse 20: 281-298.

Kötter R. (1994). Postsynaptic integration of glutamatergic and dopaminergic signals in the striatum. Prog. Neurobiol. 44: 163-196.