
\subsubsection{\sc Books}

\begin{enumerate}
\item
A.C.C. Coolen, `The Mathematical Theory of Minority Games - Statistical
Mechanics of Interacting Agents'\\ (Oxford University Press 2005)
\item
A.C.C. Coolen, R. K\"{u}hn and P. Sollich, `Theory of Neural
Information Processing Systems'\\ (Oxford University Press 2005)
\item 
A.C.C. Coolen, A. Annibale and E.S. Roberts, `Generating Random Networks and Graphs'\\
(Oxford University Press 2017)
\end{enumerate}

\subsubsection{\sc Publications in Scientific Journals}

\begin{enumerate}
\item
A.C.C. Coolen and D. van Norren, Biol. Cybern. 58 (1988), 123-128
\\ {\it `Kinetics of Human Cone Photopigment Explained with a
Rushton-Henry Model'}
\item
A.C.C. Coolen and C.C.A.M. Gielen, Europhys. Lett. 7 (1988), 281-285
\\ {\it `Delays in Neural Networks'}
\item
A.C.C. Coolen and Th.W. Ruijgrok, Phys. Rev. A38 (1988), 4253-4255
\\ {\it `Image Evolution in Hopfield Networks'}
\item
A.C.C. Coolen, H.J.J. Jonker and Th.W. Ruijgrok, Phys. Rev. A40
(1989), 5295-5298
\\ {\it `Size of the Domains of Attraction in the
Hopfield Model'}
\item
A.C.C. Coolen and F.W. Kuijk, Neural Networks 2 (1989), 495-506
\\ {\it `A Learning Mechanism for Invariant Pattern Recognition in Neural
Networks'}
\item
A.C.C. Coolen and A.J. Noest, J. Phys. A23 (1990), 575-579
\\ {\it `Selective Pattern Recall in Neural Networks by Chemical
Modulation'}
\item
A.C.C. Coolen, Future Generations Computer Systems 6 (1990), 121-130
\\ {\it `Ising Spin Neural Networks with Spatial Structure'}
\item
Th.W. Ruijgrok and A.C.C. Coolen, Acta Phys. Pol. B21 (1990), 379-389
\\ {\it `Generalised Hopfield Models for Neural Networks'}
\item
P.F.M.J. Verschure and A.C.C. Coolen, Network 2 (1991), 189-206
\\ {\it `Adaptive Fields: Distributed Representations of Classically
Conditioned Associations'}
\item
A.C.C. Coolen, J. Phys. A24 (1991), 2665-2675
\\ {\it `Analytical Expressions for Neural Interactions which Improve upon
the Projector Rule'}
\item
A.C.C. Coolen, Europhys. Lett. 16 (1991), 73-78
\\ {\it `On the Relation between Stability Parameters and Sizes of Domains
of Attraction in Attractor Neural Networks'}
\item
H.J.J. Jonker and A.C.C. Coolen, J. Phys. A24 (1991), 4219-4234
\\ {\it `Unsupervised Dynamic Learning in Layered Neural Networks'}
\item
A.C.C. Coolen and L.G.V.M. Lenders, J. Phys. A25 (1992), 2577-2592
\\ {\it `Dual Processes in Neural Network Models I: Neural Dynamics
versus Dynamics of Learning'}
\item
A.C.C. Coolen and L.G.V.M. Lenders, J. Phys. A25 (1992), 2593-2606
\\ {\it `Dual Processes in Neural Network Models II: Analysis of
Zero-temperature Fixed-Point Equations'}
\item
M. Bartholomeus and A.C.C. Coolen, Biol. Cybern. 67 (1992), 285-290
\\ {\it `Sequences of Smoothly Correlated Patterns in Neural Networks
with Random Transmission Delays'}
\item
A.C.C. Coolen and D. Sherrington, J. Phys. A25 (1992), 5493-5526
\\ {\it `Competition Between Pattern Reconstruction and Sequence
Processing in Non-Symmetric Neural Networks'}
\item
H.J.J. Jonker and A.C.C. Coolen, J. Phys. A26 (1993), 563-579
\\ {\it `Learning in Neural Networks by Eliminating Frustrated Bonds'}
\item
D. Sherrington, K.Y.M. Wong and A.C.C. Coolen, J. Physique I 3 (1993),
331-337
\\ {\it `Noise and Competition in Neural Networks'}
\item
L. Viana and A.C.C. Coolen, J. Physique I 3 (1993), 777-786
\\ {\it `Attraction Domains in Neural Networks'}
\item
A.C.C. Coolen, A.J. Noest and G.B. de Vries, Network 4 (1993), 101-116
\\ {\it `Modelling Chemical Modulation of Neural Processes'}
\item
H.J.J. Jonker, A.C.C. Coolen and J.J. Denier van der Gon, J. Phys. A26
(1993), 2549-2571
\\ {\it `On the Function and Development of Spatial Structure in
Layered Neural Networks'}
\item
W.A.J.J. Wiegerinck and A.C.C. Coolen, J. Phys. A26 (1993), 2535-2548
\\ {\it `The Connections of Large Perceptrons'}
\item
R.W. Penney, A.C.C. Coolen and D. Sherrington, J. Phys. A26 (1993), 3681-3695
\\ {\it `Coupled Dynamics of Fast Spins and Slow Interactions in
Neural Networks and Spin Systems'}
\item
A.C.C. Coolen, R.W. Penney and D. Sherrington, Phys. Rev. B48 (1993),
16116-16118
\\ {\it `Coupled Dynamics of Fast Spins and Slow Interactions: An
Alternative Perspective on Replicas'}
\item
A.C.C. Coolen and D. Sherrington, Phys. Rev. Lett. 71 (1993),
3886-3889
\\ {\it `Dynamics of Fully Connected Attractor Neural Networks near
Saturation'}
\item
A.C.C. Coolen and D. Sherrington, Physica A 200 (1993), 602-607
\\ {\it `Equilibrium Distributions of Stochastic Networks without
Detailed Balance'}
\item
A.C.C. Coolen and D. Sherrington, Phys. Rev. E49 (1994), 1921-1934
\\ {\it `Order Parameter Flow in the Fully Connected Hopfield Model
near Saturation'}
\item
A.C.C. Coolen and S. Franz, J. Phys. A27 (1994), 6947-6954
\\ {\it `Closure of Macroscopic Laws in Disordered Spin Systems: a Toy
Model'}
\item
A.C.C. Coolen and D. Sherrington, J. Phys. A27 (1994), 7687-7707
\\ {\it `Order Parameter Flow in the SK Spin-Glass I: Replica
Symmetry'}
\item
S.N. Laughton and  A.C.C. Coolen, J. Phys. A27 (1994), 8011-8028
\\ {\it `Quasi-periodicity and Bifurcation Phenomena in Ising Spin
Neural Networks with Asymmetric Interactions'}
\item
S.N. Laughton and  A.C.C. Coolen, Phys. Rev. E51 (1995), 2581-2599
\\ {\it `Order-Parameter Flow in Symmetric and Nonsymmetric Fully
Connected Attractor Neural Networks Near Saturation'}
\item
W. Whyte, D. Sherrington and A.C.C. Coolen, J. Phys. A28 (1995),
3421-3437
\\ {\it `Competition Between Pattern Recall and Sequence Processing in
a Neural Network Storing Correlated Patterns'}
\item
S.N. Laughton and A.C.C. Coolen, J. Stat. Phys. 80 (1995),
375-387
\\ {\it `Macroscopic Lyapunov Functions for Separable Stochastic
Neural Networks with Detailed Balance'
}
\item
S.N. Laughton, A.C.C. Coolen and D. Sherrington,  J. Phys. A29 (1996),
763-786
\\ {\it `Order-Parameter Flow in the SK Spin-Glass II: Inclusion of
Microscopic Memory Effects'}
\item
A.C.C. Coolen, S.N. Laughton and D. Sherrington,  Phys. Rev. B53 (1996),
8184-8187
\\ {\it `Dynamical Replica Theory for Disordered Spin Systems'}
\item
A.C.C. Coolen and L. Viana,  J. Phys. A29 (1996), 7855-7866
\\ {\it `Feed-Forward Chains of Recurrent Attractor Neural Networks
Near Saturation'}
\item
C.W.H. Mace and A.C.C. Coolen, Statistics and Computing 8 (1998), 55-88
\\ {\it `Statistical Mechanical Analysis of the Dynamics of Learning
in Perceptrons'}
\item
H.J.J. Jonker, A.C.C. Coolen and J.J. Denier van der Gon, Network 9
(1998), 345-362
\\ {\it `Autonomous Development of Decorrelation Filters in Neural
Networks with Recurrent Inhibition'}
\item
A. Castellanos, A.C.C. Coolen and L. Viana, J.Phys. A31 (1998), 6615-6634
\\ {\it `Finite-Size Effects in Separable Recurrent Neural Networks'}
\item
A. D\"{u}ring, A.C.C. Coolen and D. Sherrington, J.Phys. A31 (1998), 8607-8621
\\ {\it `Phase Diagram and Storage Capacity of Sequence Processing
Neural Networks'}
\item
G. Jongen, D. Boll\'{e} and A.C.C. Coolen, J. Phys. A31 (1998), L737-L742
\\{\it `The XY Spin-Glass with Slow Dynamic Couplings'}
\item
H.C. Rae, P. Sollich and A.C.C. Coolen, J. Phys. A32 (1999), 3321-3339
\\{\it `On-Line Learning with Restricted Training Sets: An Exactly
Solvable Case'}
\item
N.S. Skantzos and A.C.C. Coolen, J. Phys. A33 (2000), 1841-1855
\\{\it `Random Field Ising Chains with Synchronous Dynamics'}
\item
N.S. Skantzos and A.C.C. Coolen, J. Phys. A33 (2000), 5785-5807
\\{\it `$(1+\infty)$-Dimensional Attractor Neural Networks'}
\item
A.C.C. Coolen and D. Saad,  Phys. Rev. E62 (2000), 5444-5487
\\{\it `Dynamics of Learning with Restricted Training Sets'}
\item
P. Sollich, N. Nishimori, A.C.C. Coolen and A.J. van der Sijs, J.
Phys. Soc. Jap. 69 (2000), 3200-3213
\\{\it `Nontrivial Phase Behaviour in the Infinite-Range Quantum
Mattis Model'}
\item
A.C.C. Coolen, D. Saad and Y.S. Xiong,  Europhys. Lett. 51 (2000), 691-697
\\{\it `On-line Learning from Restricted Training Sets in Multilayer
Neural Networks'}
\item
H.C. Rae, J.F. Heimel and A.C.C. Coolen, J. Phys. A33  (2000), 8703-8722
\\{\it `Non-deterministic Learning Dynamics in Large Neural networks
due to Structural Data Bias'}
\item
N.S. Skantzos and A.C.C. Coolen, J. Phys. A34  (2001), 929-942
\\{\it `Attractor Modulation and Proliferation in
$(1+\infty)$-Dimensional Neural Networks'}
\item
J. van Mourik and A.C.C. Coolen, J. Phys. A34  (2001), L111-L117
\\{\it `Cluster Derivation of Parisi's RSB Solution for Disordered
Spin Systems}
\item
J.A.F. Heimel and A.C.C. Coolen, Phys. Rev. E63 (2001), 056121
\\{\it `Generating Functional Analysis of the Dynamics of the Batch
Minority Game with Random External Information'}
\item
G. Jongen, J. Anem\"{u}ller, D. Boll\'{e}, A.C.C. Coolen and C
Perez-Vicente, J. Phys. A34 (2001), 3957-3984
\\{\it `Coupled Dynamics of Fast Spins and Slow Exchange Interactions
in the XY Spin Glass' }
\item
N.S. Skantzos, J. van Mourik and A.C.C. Coolen, J. Phys. A34 (2001), 4437-4457
\\{\it `A Solvable Model of Secondary Structure Formation in Random
Hetero-Polymers'}
\item
J.I. Inoue and A.C.C. Coolen, J. Phys. A34 (2001), L401-L408
\\{\it `Dynamics of On-Line Hebbian Learning with Structurally
Unrealizable Restricted Training Sets'}
\item
H. Chakravorty, J. van Mourik and A.C.C. Coolen, Eur. Phys. J. E5 (2001), 539-550
\\{\it `Solvable Lattice Gas Models of Random Heteropolymers at Finite
Density II: Dynamics and Transitions to Compact States'}
\item
J.A.F. Heimel and A.C.C. Coolen, J. Phys. A34 (2001), 9009-9026
\\{\it `Supervised Learning with Restricted Training Sets: a
Generating Functional Analysis'}
\item
A.C.C. Coolen and J.A.F. Heimel, J. Phys. A34 (2001), 10783-10804
\\{\it `Dynamical Solution of the On-Line Minority Game'}
\item
A.C.C. Coolen, J.A.F. Heimel and D. Sherrington, Phys. Rev. E65 (2001), 016126
\\{\it `Dynamics of the Batch Minority Game with Inhomogeneous
Decision Noise'}
\item
T. Uezu and A.C.C. Coolen, J. Phys. A35 (2002), 2761-2809
\\{\it `Hierarchical Self-Programming in Recurrent Neural Networks'}
\item
D. Sherrington, A.C.C. Coolen and J.A.F. Heimel (2002), Physica A
314, 83-91 \\ {\it  `Stochastic decision making in the minority
game'}
\item
H. Chakravorty,  A.C.C. Coolen and D. Sherrington, J. Phys. A35 (2002), 8647-8671
\\{\it `Coupled dynamics of sequence selection and compactification in
mean-field hetero-polymers'}
\item
A.C.C. Coolen and C. P\'{e}rez-Vicente, J. Phys. A36 (2003),
4477-4508
\\{\it `Partially and Fully Frustrated Coupled Oscillators with Random Pinning Fields''}
\item
A.C.C. Coolen, Markov Processes and Related Fields 9 (2003),
177-194
\\{\it `Non-Equilibrium Statistical Mechanics of Minority Games'}
\item
A.C.C. Coolen and V. Del Prete,
Rev. Neurosci. 14 (2003), 181-193
\\{\it `Statistical mechanics beyond the Hopfield model: solvable
problems in neural network theory'}
\item
B. Wemmenhove and A.C.C. Coolen, J. Phys. A36 (2003), 9617-9633
\\{\it `Finite Connectivity Attractor Neural Networks'}
\item
T. Galla, A.C.C. Coolen and D. Sherrington, J. Phys. A36 (2003), 11159-11172
\\{\it `Dynamics of a spherical Minority Game'}
\item
V. Del Prete and A.C.C. Coolen, Neurocomputing 58-60 (2004), 239-244
\\{\it `Non-Equilibrium Statistical Mechanics of Recurrent Networks
with Realistic Neurons'}
\item
J.P.L. Hatchett, B. Wemmenhove, I. P\'{e}rez-Castillo,
T. Nikoletopoulos, N.S. Skantzos and A.C.C. Coolen, J. Phys. A37 (2004), 6201-6220
\\{\it `Parallel Dynamics of Disordered Ising Spin Systems on Finitely
Connected Random Graphs'}
\item
T. Nikoletopoulos, A.C.C. Coolen, I. P\'{e}rez-Castillo,
N.S. Skantzos, J.P.L. Hatchett and B. Wemmenhove, J. Phys. A37 (2004), 6455-6475
\\{\it `Replicated Transfer Matrix Analysis of Ising Spin Models on
`Small World' Lattices'}
\item
J.P.L. Hatchett and A.C.C. Coolen, J. Phys. A37 (2004), 7199-7212
\\{\it `Asymmetrically Extremely Dilute Neural Networks with Langevin
Dynamics and Unconventional Results'}
\item
B. Wemmenhove, N.S. Skantzos and A.C.C. Coolen, J. Phys. A37 (2004), 7653-7670
\\{\it `Slowly Evolving Connectivity in Recurrent Neural Networks I:
The Extreme Dilution Regime'}
\item
T. Nikoletopoulos and A.C.C. Coolen, J. Phys. A37 (2004), 8433-8456
\\{\it `Diagonalization of Replicated Transfer Matrices for Disordered
Ising Spin Systems'}
\item
 I. P\'{e}rez-Castillo, B. Wemmenhove,  J.P.L. Hatchett,  A.C.C.
Coolen, N.S. Skantzos and
T. Nikoletopoulos,
 J. Phys. A37 (2004), 8789-8799
\\{\it `Analytic Solution of Attractor Neural Networks on Scale-free
Graphs'}
\item
A.C.C.
Coolen,
 J. Phys. A38 (2005), 2311-2347
\\{\it `Generating functional analysis of minority games with real
market histories'}
\item
A.C.C. Coolen, N.S. Skantzos, I. P\'{e}rez Castillo, C.J. Perez
Vicente, J.P.L. Hatchett, B. Wemmenhove and T. Nikoletopoulos,
J. Phys. A38 (2005), 8289-8317
\\{\it `Finitely connected vector spin systems with random matrix
interactions'}
\item
J.P.L. Hatchett, I. P\'{e}rez Castillo, A.C.C. Coolen and N.S. Skantzos,
Phys. Rev. Lett. 95 (2005), 117204
\\{\it `Dynamical replica analysis of disordered Ising spin systems on
finitely connected random graphs'}
\item
T. Uezu, C. Kadono, J.P.L. Hatchett and A.C.C. Coolen, Prog.
Theor. Phys. 161 (2006), 385-388\\ {\it `A  large scale dynamical
system immune network model with finite connectivity'}
\item
N. Shayeghi and A.C.C. Coolen, J. Phys. A39 (2006), 13921-13950\\
{\it `Generating functional analysis of batch minority games with
arbitrary strategy numbers'}
\item
A. Mozeika and A.C.C. Coolen, J. Phys. A41 (2008), 115003\\
{\it `Dynamical replica analysis of processes on finitely connected random graphs:
I. Vertex covering'}
\item
C.J. P\'{e}rez-Vicente and A.C.C. Coolen, J. Phys. A41 (2008), 255003\\
{\it `Spin models on random graphs with controlled topologies beyond degree constraints'}
\item
S. Rabello, A.C.C. Coolen, C.J. P\'{e}rez-Vicente and F. Fraternali, J. Phys. A41 (2008), 285004\\
{\it `A solvable model of the genesis of amino-acid sequences via coupled dynamics of folding and slow genetic variation'}
\item
A.C.C. Coolen and N. Shayeghi, J. Phys. A41 (2008), 324006 \\
{\it `Generating functional analysis of minority games with inner product strategy definitions'}
\item
P. Papadopoulos and A.C.C. Coolen, J. Phys. A41 (2008), 365002 \\
{\it `Market response to external events and interventions in spherical minority
games'}
\item
G. Bianconi, A.C.C. Coolen and C.J. Perez-Vicente,
Phys. Rev. E78 (2008), 016114 \\
{\it `Entropies of complex networks with hierarchically constrained topologies'}
\item
K. Makrogianneli et al, Mol. Cell Biol. 29 (2009),
2997-3006 \\
{\it
`Integrating receptor signal inputs that influence small rho GTPase
activation dynamics at the immunological synapse'}
\item
A. Mozeika and A.C.C. Coolen, J. Phys. A42 (2009), 195006\\
{\it `Dynamical replica analysis of processes on finitely connected random graphs:
 II. Dynamics in the Griffiths phase of the diluted Ising ferromagnet'}
\item
K. Mimura and  A.C.C. Coolen, J. Phys. A42 (2009), 415001\\
{\it `Parallel dynamics of disordered Ising spin systems on finitely connected random graphs with arbitrary degree distributions'}
\item
A.C.C. Coolen, A. De Martino and A. Annibale,  J. Stat. Phys. 136
(2009), 1035-1067\\
{\it `Constrained Markovian dynamics of random graphs'}
\item
A. Annibale, A.C.C.
Coolen, L.P. Fernandes, F. Fraternali and J. Kleinjung, J. Phys. A:
Math. Theor. 42 (2009), 485001 \\
{\it `Tailored
graph ensembles as proxies or null models for real networks I: tools
for quantifying structure'}
\item
M. Kelleher et al, Targ. Oncol. 10.1007 (2009), s11523-009-0116-y
\\
{\it 
`The potential of optical
proteomic technologies to individualize prognosis and guide rational
treatment for cancer patients'}
\item
P. Papadopoulos and A.C.C. Coolen, J. Phys. A: Math. Theor. 43 (2010) 025005  \\
{\it `Theory 
of agent-based market models with controlled levels of greed and anxiety'} 
\item
A. Annibale,  A.C.C. Coolen and G. Bianconi, J. Phys. A:
Math. Theor. 43 (2010) 395001  \\
{\it `Network resilience against intelligent attacks constrained by the degree-dependent node removal 
cost'} 
\item
L.P. Fernandes, A. Annibale, J. Kleinjung, A.C.C. Coolen and F. Fraternali, 
PLoS ONE 5 (2010) e12083\\
{\it `Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods'} 
\item
P.R. Barber, S.M. Ameer-Beg, S. Pathmananthanan, M. Rowley and A.C.C. Coolen, 
Biomedical Optics Express 1 (2010), 1148-1155\\
{\it` A Bayesian method for single molecule, fluorescence burst analysis'}
\item
E.S. Roberts, T. Schlitt and A.C.C. Coolen, J. Phys. A 44 (2011) 275002\\
{\it `Tailored
graph ensembles as proxies or null models for real networks II: results on directed graphs}
\item
A. Annibale and A.C.C. Coolen, Interface Focus  1 (2011) 536-556\\
{\it `What you see is {\em not} what you get: how sampling affects macroscopic features of biological networks}
\item
 L.M. Carlin et al, Science Signaling 4 (2011) 1-11\\
{\it `A Targeted siRNA Screen Identifies Regulators of Cdc42 Activity at the Natural Killer Cell Immunological Synapse'}
\item
A.C.C. Coolen and K. Takeda, Philosophical Magazine  92 (2011) 64 - 77
\\
{\it `Transfer operator analysis of the
parallel dynamics of disordered Ising
chains'}
\item
 N. Shayeghi, T. Ng and A.C.C. Coolen, J. Theor. Biol.  304 (2012)  219-225\\
{\it  `Direct Response Analysis in cellular signalling networks'}
\item
E. S. Roberts and A. C. C. Coolen, Phys. Rev. E 85 (2012) 
 046103 \\
{\it `Unbiased degree-preserving randomization of directed binary networks'}
\item
 E. Agliari, A. Annibale, A. Barra, A.C.C. Coolen and D. Tantari, J. Phys. A 46 (2013) 335101\\
 {\it `Immune networks: multi-tasking capabilities at medium load'}
\item
 E. Agliari, A. Annibale, A. Barra, A.C.C. Coolen and D. Tantari, J. Phys. A 46 (2013) 415003\\
 {\it `Immune networks: multi-tasking capabilities near saturation'}
\item
E.S. Roberts and A.C.C. Coolen, J. Phys. A 47 (2014)  046103 \\
{\it `Entropies of tailored random graph ensembles: bipartite graphs, generalized degrees, and node neighbourhoods'}
\item
G. Weitsman et al, Biochem. Soc. Trans. 42 (2014) 1498-1505\\
  {\it `Imaging tumour heterogeneity of the consequences of a PKCa-substrate interaction in breast cancer patients'}
  \item
  S.S. Chung, A. Pandini, A. Annibale, A.C.C. Coolen, N.S.B. Thomas and F. Fraternali, Sci. Rep. 5:8540 (2015) \\
  {\it `Bridging topological and functional information in protein interaction networks by short loops profiling'}
\item
A. Mozeika and A.C.C. Coolen, J. Phys. A 48 (2015) 255001\\
{\it `Spin systems on hyper cubic Bethe lattices: a Bethe-Peierls approach'}
\item
A. Annibale, A.C.C. Coolen and N. Planell-Morell, J. R. Soc. Interface
         12 (2015), 20150573\\
         {\it `Quantifying noise in mass spectrometry and yeast two-hybrid protein interaction experiments'}
 \item
 J.E. Barrett and A.C.C. Coolen, Statistics in Medicine (2015), DOI: 10.1002/sim.6784\\
 {\it `Covariate dimension reduction for survival data via the Gaussian process latent variable model'}
 \item
 W. Wulaningsih et al, BMC Cancer (2015), DOI 10.1186/s12885-015-1928-z\\
{\it `Prediagnostic serum glucose and lipids in relation to survival in breast cancer patients: a competing risk analysis'}
\item 
A. Shalabi, M. Inoue, J. Watkins, E. De Rinaldis and A.C.C. Coolen, Stat. Meth. Med. Res. (2016), DOI: 10.1177//0962280216628901\\
{\it `Bayesian clinical classification from high-dimensional data: signatures versus variability'}
\item
G. Weitsman et al, Oncotarget 7 (2016), 51012-51026\\
{\it `HER2-HER3 dimer quantification by FLIM-FRET predicts breast
cancer metastatic relapse independently of HER2 IHC status'}
\item 
M.I. Rowley, A.C.C. Coolen, B. Vojnovic and P.R. Barber, PLOS ONE (2016), DOI: 10.1371/journal.pone.0158404\\
{\it `Robust Bayesian fluorescence lifetime estimation, decay model selection and instrument response determination 
for low-intensity FLIM imaging'}
\item 
V.G. Martin et al, Front. Immunol. 7 (2016) 546, DOI: 10.3389/fimmu.2016.00546\\
{\it `Transitional B Cells in Early Human B Cell Development. Time to Revisit the Paradigm?'}
\item 
A. Mozeika and A.C.C. Coolen, J. Phys. A: Math. Theor. 50 (2017) 035602 \\
{\it `Statistical mechanics of clonal expansion in lymphocyte networks modelled with slow  and fast variables'}
\item 
M. Rowley, H. Garm\"{o}, M. Van Hemelrijck, W. Wulaningsih, B. Grundmark, B. Zethelius, N. Hammar, G. Walldius, M. Inoue, L. Holmberg and A.C.C. Coolen,
Statistics in Medicine (2017), DOI: 10.1002/sim.7246\\
{\it `A latent class model for competing risks'}
\item 
E. Agliari, A. Annibale, A. Barra, A.C.C. Coolen and D. Tantari, EPL 117 (2017) 28003\\
{\it `Retrieving infinite numbers of patterns in a spin-glass model of immune networks'}
\item 
A.C.C. Coolen, J.E.Barrett, P. Paga and C.J. Perez-Vicente, J. Phys. A: Math. Theor. 50 (2017) 375001 \\
{\it `Replica analysis of overfitting in regression models for time-to-event data'}
\item
A. Grigoriadis, P. Gazinska, T. Pai, S. Irshad, Y. Wu, R. Millis, K. Naidoo, J. Owen, C.E. Gillett, A. Tutt, A.C.C. Coolen and S.E. Pinder, J. Path: Clin. Res. (2018), DOI: 10.1002/cjp2.87\\
{\it `Histological scoring of immune and stromal features in breast and axillary lymph nodes is prognostic for distant metastasis in lymph node-positive breast cancers'}
\item 
F.  Aguirre Lopez, P. Barucca, M. Fekom and A.C.C. Coolen, J. Phys. A: Math. Theor. 51 (2018) 085101 \\
{\it `Exactly solvable random graph ensemble with extensively many short cycles'}
\item
C. Haggstrom, M. Van Hemelrijck, H. Garmo, D. Robinson, P. Sattin, M. Rowley, A.C.C. Coolen and L. Holmberg, Int. J. Cancer  (2018), DOI: 10.1002/ijc.31587 \\
{\it    `Heterogenity in risk of prostate cancer: a Swedish population-based cohort study of competing risks and Type 2 diabetes mellitus'}
\item
A. Mozeika and A.C.C. Coolen, Phys. Rev. E98 (2018) 042133\\
{\it `Mean-field theory of Bayesian clustering'}
\item 
M. Sheikh and A.C.C. Coolen, Journal of Classification  (2019), DOI: 10.1007/s00357-019-09316-6\\
{\it `Accurate Bayesian data classification without hyperparameter cross-validation'}
\item
M. Sheik and A.C.C. Coolen, J. Phys. A: Math. Theor. 52 (2019) 384002\\
{\it `Analysis of overfitting in the regularized Cox model'}
\item 
P.R Barber,  G. Weitsman, K. Lawler, 
J.E.Barrett, M. Rowley, M. Rodriguez-Justo, D. Fisher, 
F. Gao, I.D.C. Tullis, J. Deng, L. Brown, R. Kaplan, D. Hochhauser, R. Adams, T.S. Maughan, B. Vojnovic, 
A.C.C. Coolen, T. Ng, J. Natl. Cancer Inst (2020) 112(9): doi: 10.1093/jnci/djz231\\
{\it `HER2-HER3 heterodimer quantification by FRET-FLIM and patient
subclass analysis of the COIN colorectal trial'}
\item
F. Aguirre L\'{o}pez and A.C.C. Coolen, J. Phys. A: Math. Theor. 53 (2020) 065002\\
{\it `Imaginary replica analysis of loopy regular random graphs'}
\item
A. Mozeika and A.C.C. Coolen, J. Phys. A: Math. Theor. 53 (2020) 034001\\
{\it `Replica analysis of Bayesian data clustering'}
\item 
A.C.C. Coolen, M. Sheikh, A. Mozeika, F. Aguirre-Lopez and F. Antenucci, 
J. Phys. A: Math. Theor. 53 (2020) 365001\\
{\it `Replica analysis of overfitting in
generalized linear regression models'}
\item 
J.M. Colijn et al, Ophthalmology 20 (2020) doi: 10.1016/j.ophtha.2020.11.024\\
{\it `Genetic Risk, Lifestyle, and Age-Related Macular Degeneration in Europe: The EYE-RISK Consortium'}
\item
S. Abdul-Jawad et al, Cancel Cell (2021) doi: https://doi.org/10.1016/j.ccell.2021.01.001\\
{\it `Acute immune sugnatures and their legacies in severe acute respiratory syndrome coronavirus-2 infected cancer patients'}
\item 
F. Aguirre L\'{o}pez and A.C.C. Coolen, J. Phys. Complex. 2 (2021) 035010  \\
{\it `Transitions in random graphs of fixed degrees with many short cycles'}
\item
 A. Mozeika, M. Sheikh, F. Aguirre L\'{o}pez, F. Antenucci and A.C.C. Coolen, Phys. Rev. E 103 (2021) 042142 \\
 {\it `Exact results on high-dimensional linear regression via statistical physics'}
\end{enumerate}


\subsubsection{\sc Review Papers, Book Chapters \& Edited Books}

\begin{enumerate}
\item
A.C.C. Coolen and D. Sherrington, `Mathematical Approaches to Neural
Networks' (North-Holland 1993; ed. J.G. Taylor), 293-306
\\ {\it `Dynamics of Attractor Neural Networks'}
\item
D. Sherrington, A.C.C. Coolen and S.N. Laughton, CNLS Newsletter (Los
Alamos) 124 (1996), 1-12
\\ {\it `Macrodynamics of Disordered and Frustrated Systems'}
\item
Th.M. Nieuwenhuizen and A.C.C. Coolen, Nederlands Tijdschrift voor
Natuurkunde 62/7 (1996), 187-190
\\ {\it `Breking van Ergodiciteit in Glasachtige Spinsystemen'}
\item
A.C.C. Coolen, in `Concepts for Neural Networks - A Survey'
(Springer 1998; eds. L.J. Landau and J.G. Taylor), 13-70
\\ {\it `A Beginner's Guide to the Mathematics of Neural Networks'}
\item
A.C.C. Coolen, in Handbook of Biological Physics Vol 4
(Elsevier Science 2001; eds. F. Moss and S. Gielen), 531-596
\\ {\it `Statistical mechanics of Recurrent Neural networks I:
Statics'}
\item
A.C.C. Coolen, in Handbook of Biological Physics Vol 4
(Elsevier Science 2001; eds. F. Moss and S. Gielen), 597-662
\\ {\it `Statistical mechanics of Recurrent Neural networks II:
Dynamics'}
\item
`Disordered and Complex Systems' (AIP Conference Proceedings 553,
2001;
eds. P. Sollich, A.C.C. Coolen, L.P. Hughston and R.F. Streater)
\item
A.C.C. Coolen, in `Handbook of Brain Theory and Neural Networks -
2nd Edition (2002) MIT Press (MA Arbib, Ed), 377-381 \\ {\it
`Dynamics of recall and association'}
\item
G.O. Fruhwirth, L.P. Fernandes, G. Weitsman, G. Patel, M. Kelleher, K. Lawler, A. Brock,  S.P. Poland, Dr. D.R. Matthews, G. Keri, P.R. Barber, B. Vojnovic, S.M. Ameer-Beg, A.C.C. Coolen, F. Fraternali, T. Ng,
Chem. Phys. Chem 12 (2011) 442-461\\
{\it 
`How F\"{o}rster Resonance Energy Transfer Imaging Improves the Understanding of Protein Interaction Networks in Cancer Biology'}
\item
A.C.C. Coolen, F. Fraternali, A. Annibale, L.P. Fernandes, and J. Kleinjung, in Handbook of Statistical Systems Biology (Wiley; M Stumpf, DJ Balding and M Girolami, Eds) (2011) 309-330\\
{\it  `Modelling biological networks via tailored random graphs'}
\end{enumerate}


\subsubsection{\sc Publications in Conference Proceedings}

\begin{enumerate}
\item
A.C.C. Coolen, J.J. Denier van der Gon and Th.W. Ruijgrok, `Neural
Networks from Models to Applications' (IDSET Paris 1989; ed. L.
Personnaz and G. Dreyfus), 269-278
\\ {\it `An Exact Dynamical Solution for Generalised Hopfield Networks'}
\item
C.C.A.M. Gielen and A.C.C. Coolen, `Neural Networks from Models to
Applications' (IDSET Paris 1989; ed. L. Personnaz and G. Dreyfus),
269-278
\\ {\it `Self-Organisation in Neural Networks Underlying the
Coordination of Movements'}
\item
H.J.J. Jonker, A.C.C. Coolen and J.J. Denier van der Gon, `Artificial
Neural Networks' (IEE London 1989), 23-26
\\ {\it `Linear Interpolation with Binary Neurons'}
\item
A.C.C. Coolen, J.J. Denier van der Gon and Th.W. Ruijgrok, `Artificial
Neural Networks' (IEE London 1989), 238-241
\\ {\it `Evolution Equations for Neural Networks with Arbitrary Spatial
Structure'}
\item
A.C.C. Coolen and J.J. Denier van der Gon, `Intelligent Autonomous
Systems II' (IAS Amsterdam 1989; ed. T. Kanade, F. Groen and L.
Hertzberger), 89-99
\\ {\it `Evolution Equations for Neural Networks
with Arbitrary Spatial Structure: The Onset of Order'}
\item
J.J. Denier van der Gon, A.C.C. Coolen, C.J. Erkelens and H.J.J.
Jonker, `Multiple Muscle Systems' (Springer New York 1990; ed. J.
Winters and S. Woo), 336-342
\\ {\it `Self-Organizing Neural Mechanisms
Possibly Responsible for Movement Coordination'}
\item
A.C.C. Coolen, `Statistical Mechanics of Neural Networks' (Springer
Berlin 1990; ed. L. Garrido), 381-396
\\ {\it `Ising Spin Neural Networks with Spatial Structure'}
\item
M. Braamhof (presently: Abramoff), A.C.C. Coolen, G. Wieneke and P. Janssen, `Speech Motor
Control and Stuttering' (Elsevier Science Publ. 1991; ed. Peters,
Hulstijn and Starkweather), 181-188
\\ {\it `Can Neural Networks Explain Dysfluent Speech ?'}
\item
W. Wiegerinck and A.C.C. Coolen, `Artificial Neural Networks 2'
(Elsevier Science Publ. 1992; ed. I. Aleksander and J. Taylor),
277-280
\\ {\it `The Connections of Large Perceptrons'}
\item
A.C.C. Coolen, A.J. Noest and G.B. de Vries, `Neural Networks: from
Biology to High Energy Physics II'
(World Scientific 1993; ed. O. Benhar, C. Bosio, P. Del Giudice and M.
Grandolfo), 149-161
\\ {\it `The Modeling of Chemical Modulation in Neural Networks'}
\item
A.C.C. Coolen and D. Sherrington, `ICANN '93'
(Springer-Verlag 1993; ed. S. Gielen and B. Kappen), 722-725
\\ {\it `Equilibrium Statistical Mechanics of Non-symmetric Neural
Networks'}
\item
A.C.C. Coolen, R.W. Penney and D. Sherrington,
`Neural Information
Processing Systems 6' (Morgan Kaufmann 1994; ed. J.D. Cowan, G.
Tesauro and J. Alspector), 447-454
\\ {\it `Coupled Dynamics of Fast Neurons and Slow Interactions'}
\item
D. Sherrington and A.C.C. Coolen, `25 Years of Non-Equilibrium
Statistical Mechanics', Proc. Sitges XIII, (Springer Lecture Notes in
Physics 1995; ed. J. Brey, J. Marro, J. Rubi and M. San Miguel), 161-176
\\ {\it `Evolution of Order Parameters in Disordered Spin Systems - a
Closure Procedure'}
\item
D. Sherrington, R.W. Penney and A.C.C. Coolen.
`Chaos and Complexity', Proc. Blois 1993, (Editions Frontiers 1995;
eds. Tran Thanh Van, Berge, Conte and Dubois), 229-232
\\ {\it `Complexity in the Coupled Dynamics of Fast Neurons and Slow
Synapses'}
\item
A.C.C. Coolen, S.N. Laughton and D. Sherrington,
`Neural Information
Processing Systems 8' (MIT Press 1996; ed. D.S. Touretzky, M.C.
Moser and M.E. Hasselmo), 253-259
\\ {\it `Modern Analytic Techniques to Solve the Dynamics of Recurrent
Neural Networks'}
\item
D. Sherrington, A.C.C. Coolen and S.N. Laughton, `StatPhys 19', (World
Scientific 1996; ed. H. Bailin), 401-409
\\ {\it `Macrodynamics of Disordered and Frustrated Systems'}
\item
A.C.C. Coolen and L. Viana, `Biological and Artificial Computation:
From Neuroscience to Technology', (Springer 1997; eds. J. Mira, R.
Moreno-D\'{i}az and J. Cabestany), 257-264
\\ {\it `Competition Between Feed-Forward and Lateral Information
Processing in Layered Neural Networks'}
\item
A.C.C. Coolen and D. Saad, `On-Line Learning in Neural Networks',
(Cambridge U.P. 1998; ed. D. Saad), 303-343
\\ {\it `Dynamics of Supervised Learning with Restricted Training
Sets'}
\item
G. Jongen, J. Anem\"{u}ller, D. Boll\'{e} and A.C.C. Coolen,
`StatPhys 21', (Springer 1998; eds. A. Gervois, M. Gingold, D.
Iagolnitzer), 12-12
\\ {\it `Networks of fast Oscillators with Slow Dynamic Couplings'}
\item
N.S. Skantzos, C.F. Beckmann and A.C.C. Coolen,
`Neural Information Processing Systems 11'  (MIT Press 1999; ed. M.S.
Kearns, S.A. Solla, D.A. Cohn), 337-343
\\{\it `Discontinuous Recall Transitions Induced by Competition
Between Short- and Long-Range Interactions in
Recurrent Networks'}
\item
H.C. Rae, P.K. Sollich and A.C.C. Coolen,
`Neural Information Processing Systems 11'  (MIT Press 1999; ed. M.S.
Kearns, S.A. Solla, D.A. Cohn), 316-322
\\{\it `On-Line Learning with Restricted Training Sets: Exact Solution as a Benchmark for General Theories'}
\item
A. D\"{u}ring, A.C.C. Coolen and D. Sherrington,
`Neural Information Processing Systems 11'  (MIT Press 1999; ed. M.S.
Kearns, S.A. Solla, D.A. Cohn), 211-217
\\{\it `Phase Diagram and Storage Capacity of Sequence Storing Neural Networks'}
\item
A.C.C. Coolen and D. Saad,
`Neural Information Processing Systems 11'  (MIT Press 1999; ed. M.S.
Kearns, S.A. Solla, D.A. Cohn), 197-203
\\{\it `Dynamics of Supervised Learning with Restricted Training
Sets'}
\item
L. Viana, A. Castellanos and A.C.C. Coolen,
`Proc. IWANN '99 - Lect. Notes. in Comp. Sci. 1606' (Springer 1999;
ed. J. Mira), 393-400
\\{\it `Finite Size Effects in Neural Networks'}
\item
A.C.C. Coolen and C.W.H. Mace,
`Neural Information Processing Systems 12'  (MIT Press 2000; ed. M.S.
S.A. Solla, T.K. Leen and K.R. M\"{u}ller), 237-243
\\{\it `Dynamics of Supervised Learning with Restricted Training
Sets and Noisy Teachers'}
\item
A.C.C. Coolen and J. van Mourik,
`Disordered and Complex Systems' (AIP Press 2001; ed. P. Sollich,
A.C.C. Coolen, L.P. Hughston and R.F. Streater,
55-60
\\{\it `Cluster Derivation of the Parisi Scheme for Disordered
Systems'}
\item
N.S. Skantzos and A.C.C. Coolen,
`Disordered and Complex Systems' (AIP Press 2001; ed. P. Sollich,
A.C.C. Coolen, L.P. Hughston and R.F. Streater,
101-106
\\{\it `Random Field Ising Chains and Neural Networks with
Synchronous Dynamics'}
\item
N.S. Skantzos, J. van Mourik and A.C.C. Coolen,
`StatPhys 21, IUPAP 21st Int. Conf. Stat. Phys.' (2001; eds. D. Lopez,
M. Narbosa and A. Robledo),
290-291
\\{\it `A Solvable Model for Secondary Structure Formation in Random
Hetero-Polymers'}
\item
K. Mimura and A.C.C. Coolen,
`Proc. of 2009 Intl. Symp. Info. Theory (ISIT)' (2009),
1829
\\{\it `Generating Functional Analysis of LDGM Channel Coding with Many Short Loops'}
\item
A.C.C. Coolen and S. Rabello, J.Phys. Conf. Series 197 (2009),
012006\\
{\it `Generating functional
analysis of complex formation and dissociation in large protein
interaction networks'}
\item 
C. Gr\'{a}cio,  A.C.C. Coolen and A. Annibale,  Nonlinear maps and their applications, Springer Proc. Math. Stat., 57, Springer, New York (2014), 81�94 \\
{\it `Cycle statistics in complex networks and Ihara's zeta function'}
\item
E.S. Roberts, A. Annibale and A.C.C. Coolen, Nonlinear maps and their applications, Springer Proc. Math. Stat., 57, Springer, New York (2014), 25-34\\
{\it `Controlled Markovian dynamics of graphs: unbiased generation
of random graphs with prescribed topological properties'}
\item 
E.S. Roberts and A.C.C. Coolen, ESAIM: Proceedings and Surveys 47 (2014), 97-115\\
{\it `Random graph ensembles with many short loops'}
\item
A.C.C. Coolen,  J.Phys. Conf. Series 699 (2016), 012022\\
{\it `Replica methods for loopy sparse random graphs'}
\end{enumerate}

%\subsubsection*{\sc Papers accepted for publication}

%\begin{enumerate}
%\item
%A.C.C. Coolen and K Takeda, Phil. Mag (in press 2011)\\
%{\it `Transfer operator analysis of the parallel dynamics of disordered Ising chains'}
%\end{enumerate}




%\subsubsection{Accepted papers}



